Source code for eoreader.stac.stac_extensions

# -*- coding: utf-8 -*-
# Copyright 2024, SERTIT-ICube - France, https://sertit.unistra.fr/
# This file is part of eoreader project
#     https://github.com/sertit/eoreader
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
STAC extensions:

- `STAC Electro-Optical Extension Specification <https://github.com/stac-extensions/eo/>`_
    - Cloud coverage (if existing)
- `STAC Projection Extension Specification <https://github.com/stac-extensions/projection/>`_
    - Projected (UTM) epsg, bbox, footprint, centroid...
- `STAC View Extension Specification <https://github.com/stac-extensions/view/>`_
    - Sun angles
    - Viewing position (in progress)
"""
import geopandas as gpd
from rasterio.crs import CRS

from eoreader import cache
from eoreader.exceptions import InvalidProductError
from eoreader.stac import StacCommonNames, stac_utils
from eoreader.stac._stac_keywords import (
    DESCRIPTION,
    EO_BANDS,
    EO_CC,
    GSD,
    PROJ_BBOX,
    PROJ_CENTROID,
    PROJ_EPSG,
    PROJ_GEOMETRY,
    PROJ_SHAPE,
    PROJ_TRANSFORM,
    TITLE,
    VIEW_AZIMUTH,
    VIEW_INCIDENCE_ANGLE,
    VIEW_OFF_NADIR,
    VIEW_SUN_AZIMUTH,
    VIEW_SUN_ELEVATION,
)
from eoreader.stac.stac_utils import (
    fill_common_mtd,
    gdf_to_bbox,
    gdf_to_centroid,
    gdf_to_geometry,
    get_media_type,
    repr_multiline_str,
)


[docs] class EoExt: """ Class of `Electro-Optical Extension Specification <https://github.com/stac-extensions/eo/>`_ of STAC items. """
[docs] def __init__(self, prod, **kwargs): try: from pystac.extensions.eo import EOExtension self.extension = EOExtension.get_schema_uri() except ImportError: self.extension = None self.cloud_cover = None self._prod = prod try: if prod._has_cloud_cover: self.cloud_cover = prod.get_cloud_cover() except (AttributeError, InvalidProductError): pass self.bands = prod.bands
def _to_repr(self) -> list: """ Get repr list. Returns: list: repr list """ band_list = [] for band, val in self.bands.items(): if val is not None: band_list.append(f"\t\t\t{band.value}:") band_list.append(f"\t\t\t\t{val.id}") if val.common_name is not None: common_name = ( val.common_name if isinstance(val.common_name, str) else val.common_name.value ) band_list.append(f"\t\t\t\t{common_name}") band_repr = "\n".join(band_list) repr_list = ["Electro-Optical STAC Extension attributes:"] if self.cloud_cover is not None: repr_list.append(f"\t{EO_CC}: {self.cloud_cover}") repr_list.append(f"\t{EO_BANDS}:\n{band_repr}") return repr_list def __repr__(self): return "\n".join(self._to_repr())
[docs] def add_to_item(self, item) -> None: """ Add extension to selected item. Args: item (pystac.Item): Selected item """ try: import pystac from pystac.extensions.eo import Band, EOExtension except ImportError: raise ImportError( "You need to install 'pystac[validation]' to export your product to a STAC Item!" ) # Add the EO extension eo_ext = EOExtension.ext(item, add_if_missing=True) if self.cloud_cover is not None: eo_ext.cloud_cover = self.cloud_cover # TODO # if self.snow_cover is not None: # eo_ext.snow_cover = self.snow_cover # Add band asset band_paths = self._prod.get_raw_band_paths() for band_name, band_path in band_paths.items(): band = self._prod.bands[band_name] try: band_asset = pystac.Asset( href=str(band_path), media_type=get_media_type(band_path), roles=[band.asset_role], extra_fields={"eoreader_name": band.eoreader_name.value}, ) # Spectral bands # Convert from numpy dtype (which are not JSON serializable) to standard dtype try: center_wavelength = stac_utils.to_float(band.center_wavelength) solar_illumination = stac_utils.to_float(band.solar_illumination) full_width_half_max = stac_utils.to_float(band.full_width_half_max) except (AttributeError, InvalidProductError): center_wavelength = None solar_illumination = None full_width_half_max = None # Create asset asset_eo_ext = EOExtension.ext(band_asset) common_name = ( band.common_name.value if isinstance(band.common_name, StacCommonNames) else None ) asset_eo_ext.bands = [ Band.create( name=band.name, common_name=common_name, description=( "No description available" if len(band.description) < 1 else band.description ), center_wavelength=center_wavelength, full_width_half_max=full_width_half_max, solar_illumination=solar_illumination, ) ] fill_common_mtd( band_asset, self._prod, **{TITLE: band.name, GSD: band.gsd, DESCRIPTION: band.description}, ) item.add_asset(band.name, band_asset) except ValueError: continue
[docs] class ProjExt: """ Class `Projection Extension Specification <https://github.com/stac-extensions/projection/>`_ of STAC items. """
[docs] def __init__(self, prod, **kwargs): try: from pystac.extensions.projection import ProjectionExtension self.extension = ProjectionExtension.get_schema_uri() except ImportError: self.extension = None self._prod = prod self.epsg = self.crs().to_epsg() self.wkt2 = self.crs().to_wkt() self.geometry = gdf_to_geometry(self.geometry_fct()) self.bbox = gdf_to_bbox(self.bbox_fct()) self.centroid = gdf_to_centroid(self.geometry_fct()) if self._prod.is_ortho: transform, width, height, _ = self._prod.default_transform() self.shape = [height, width] self.transform = transform else: self.shape = None self.transform = None
[docs] @cache def crs(self) -> CRS: """ Getter of the projected CRS Returns: CRS: Projected CRS """ return self._prod.crs()
[docs] @cache def geometry_fct(self) -> gpd.GeoDataFrame: """ Getter of the projected geometry (footprint) Returns: gpd.GeoDataFrame: Projected geometry """ if self._prod.is_ortho: return self._prod.footprint().to_crs(self.crs()) else: return self.bbox_fct()
[docs] @cache def bbox_fct(self) -> gpd.GeoDataFrame: """ Getter of the projected bbox (extent) Returns: gpd.GeoDataFrame: Projected bbox """ return self._prod.extent().to_crs(self.crs())
def _to_repr(self) -> list: """ Get repr list. Returns: list: repr list """ repr_list = [ "Projection STAC Extension attributes:", f"\t{PROJ_EPSG}: {self.epsg}", # f"\t{PROJ_WKT}: {self.wkt2}", # Too long to display f"\t{PROJ_GEOMETRY}: {repr_multiline_str(self.geometry, nof_tabs=3)}", f"\t{PROJ_BBOX}: {repr_multiline_str(self.bbox, nof_tabs=3)}", f"\t{PROJ_CENTROID}: {repr_multiline_str(self.centroid, nof_tabs=3)}", ] if self.shape is not None: repr_list.append(f"\t{PROJ_SHAPE}: {self.shape}") if self.transform is not None: repr_list.append( f"\t{PROJ_TRANSFORM}: {repr_multiline_str(self.transform, nof_tabs=3)}" ) return repr_list def __repr__(self): return "\n".join(self._to_repr())
[docs] def add_to_item(self, item) -> None: """ Add extension to selected item. Args: item (pystac.Item): Selected item """ try: from pystac.extensions.projection import ProjectionExtension except ImportError: raise ImportError( "You need to install 'pystac[validation]' to export your product to a STAC Item!" ) # Add the proj extension proj_ext = ProjectionExtension.ext(item, add_if_missing=True) proj_ext.epsg = self.epsg proj_ext.wkt2 = self.wkt2 # proj_ext.projjson = None proj_ext.geometry = self.geometry proj_ext.bbox = self.bbox proj_ext.centroid = self.centroid if self._prod.is_ortho: proj_ext.shape = self.shape # Transform need to be stored as a list: [number] proj_ext.transform = list(self.transform)
[docs] class ViewExt: """ Class `View Extension Specification <https://github.com/stac-extensions/view/>`_ of STAC items. """
[docs] def __init__(self, prod, **kwargs): try: from pystac.extensions.view import ViewExtension self.extension = ViewExtension.get_schema_uri() except ImportError: self.extension = None self.extension_fields = { "sun_az": VIEW_SUN_AZIMUTH, "sun_el": VIEW_SUN_ELEVATION, "view_az": VIEW_AZIMUTH, "off_nadir": VIEW_OFF_NADIR, "incidence_angle": VIEW_INCIDENCE_ANGLE, } try: sun_az, sun_el = prod.get_mean_sun_angles() # Convert from numpy dtype (which are not JSON serializable) to standard dtype self.sun_az = stac_utils.to_float(sun_az) self.sun_el = stac_utils.to_float(sun_el) except (AttributeError, InvalidProductError): self.sun_az = None self.sun_el = None try: view_az, off_nadir, incidence_angle = prod.get_mean_viewing_angles() # Convert from numpy dtype (which are not JSON serializable) to standard dtype self.view_az = stac_utils.to_float(view_az) self.off_nadir = stac_utils.to_float(off_nadir) self.incidence_angle = stac_utils.to_float(incidence_angle) except (AttributeError, InvalidProductError): self.view_az = None self.off_nadir = None self.incidence_angle = None
[docs] @cache def create_ext(self) -> bool: """ Returns True if at least one attribute is not None. If False, do not create the extension. Returns: bool: True if at least one attribute is not None """ return any( [getattr(self, attr) is not None for attr in self.extension_fields.keys()] )
def _to_repr(self) -> list: """ Get repr list. Returns: list: repr list """ if self.create_ext(): repr_list = [ "View STAC Extension attributes:", ] for attr, kw in self.extension_fields.items(): val = getattr(self, attr) if val is not None: repr_list.append(f"\t{kw}: {val}") else: repr_list = [] return repr_list def __repr__(self): return "\n".join(self._to_repr())
[docs] def add_to_item(self, item) -> None: """ Add extension to selected item. Args: item (pystac.Item): Selected item """ try: from pystac.extensions.view import ViewExtension except ImportError: raise ImportError( "You need to install 'pystac[validation]' to export your product to a STAC Item!" ) # Add the view extension # The View Geometry extension specifies information related to angles of sensors and other radiance angles that affect the view of resulting data if self.create_ext(): view_ext = ViewExtension.ext(item, add_if_missing=True) if self.sun_az: view_ext.sun_azimuth = self.sun_az if self.sun_el: view_ext.sun_elevation = self.sun_el if self.view_az: view_ext.azimuth = self.view_az if self.off_nadir: view_ext.off_nadir = self.off_nadir if self.incidence_angle: view_ext.incidence_angle = self.incidence_angle